{"_id":"5b0e13ffc4664e0003c75b51","user":"566590c83889610d0008a253","project":"5b0e13ffc4664e0003c75a66","__v":0,"parentDoc":null,"version":{"_id":"5b0e13ffc4664e0003c75a67","project":"5b0e13ffc4664e0003c75a66","__v":4,"createdAt":"2015-09-17T16:58:03.490Z","releaseDate":"2015-09-17T16:58:03.490Z","categories":["5b0e13ffc4664e0003c75a68","5b0e13ffc4664e0003c75a69","5b0e13ffc4664e0003c75a6a","5b0e13ffc4664e0003c75a6b","5b0e13ffc4664e0003c75a6c","5b0e13ffc4664e0003c75a6d","5b0e13ffc4664e0003c75a6e","5b0e13ffc4664e0003c75a6f","5b0e13ffc4664e0003c75a70","5b0e13ffc4664e0003c75a71","5b0e13ffc4664e0003c75a72","5b0e13ffc4664e0003c75a73","5b0e13ffc4664e0003c75a74","5b0e13ffc4664e0003c75a75","5b0e13ffc4664e0003c75a76","5b0e13ffc4664e0003c75a77","5b0e13ffc4664e0003c75a89","5b0e13ffc4664e0003c75a8a","5b0e13ffc4664e0003c75a9d","5b0e13ffc4664e0003c75a9e","5b0e13ffc4664e0003c75a9f","5b0e13ffc4664e0003c75aa0","5b0e13ffc4664e0003c75aa1","5b0e13ffc4664e0003c75aa2","5b0e13ffc4664e0003c75aa3","5b0e13ffc4664e0003c75aa4","5b0e13ffc4664e0003c75aa5","5b0e13ffc4664e0003c75aa6","5b0e13ffc4664e0003c75aa7","5b0e13ffc4664e0003c75aa8","5b0e13ffc4664e0003c75aa9","5b0e13ffc4664e0003c75aaa","5b0e13ffc4664e0003c75aab","5b0e13ffc4664e0003c75aac","5b0e13ffc4664e0003c75aad","5b0e13ffc4664e0003c75aae","5b0e13ffc4664e0003c75aaf","5b0e13ffc4664e0003c75ab2","5bb3374f4306ad0003eb18e7","5bbf3c5373e72a000318362b","5bc065567d1cb0000384c649","5cbf19a5f9181f0033fbb968"],"is_deprecated":false,"is_hidden":false,"is_beta":true,"is_stable":true,"codename":"","version_clean":"1.0.0","version":"1.0"},"category":{"_id":"5b0e13ffc4664e0003c75aa4","project":"5b0e13ffc4664e0003c75a66","version":"5b0e13ffc4664e0003c75a67","__v":0,"sync":{"url":"","isSync":false},"reference":false,"createdAt":"2016-06-23T11:34:02.608Z","from_sync":false,"order":27,"slug":"interactive-analysis","title":"INTERACTIVE ANALYSIS"},"githubsync":"","metadata":{"title":"","description":"","image":[]},"updates":[],"next":{"pages":[],"description":""},"createdAt":"2016-06-23T10:37:20.990Z","link_external":false,"link_url":"","sync_unique":"","hidden":false,"api":{"results":{"codes":[]},"settings":"","auth":"required","params":[],"url":""},"isReference":false,"order":3,"body":"CummeRbundQC gives a way of assessing the quality of differential expression analysis performed with Cuffdiff. It takes a cuffdiff.zip folder as input and produces a report that can be viewed on the Seven Bridges Platform or downloaded to your local drive. The report is also rendered in a page that can be viewed directly from outside the Platform in any internet browser. Files that can be visualized with CummeRbundQC have the special extension cuffdiffcummerbund_report.b64html.\n\nClick any file with the extension **cuffdiffcummerbund_report.b64html** to access the CummeRbundQC report.\n[block:image]\n{\n  \"images\": [\n    {\n      \"image\": [\n        \"https://files.readme.io/xIeklOuRQ82hUVoO7IHA_cummeRbund%20report.png\",\n        \"cummeRbund report.png\",\n        \"1403\",\n        \"621\",\n        \"#ce943f\",\n        \"\"\n      ],\n      \"border\": true\n    }\n  ]\n}\n[/block]\nThe left sidebar shows the contents of the CummeRbundQC report. To fully understand the report and plots, we recommend that you read the <a href=\"http://www.bioconductor.org/packages/release/bioc/html/cummeRbund.html\" target=\"blank\">tutorial for this package</a>.","excerpt":"<a name=\"top\"></a>","slug":"cummerbundqc","type":"basic","title":"CummeRbundQC RNA-Seq Visualization"}

CummeRbundQC RNA-Seq Visualization

<a name="top"></a>

CummeRbundQC gives a way of assessing the quality of differential expression analysis performed with Cuffdiff. It takes a cuffdiff.zip folder as input and produces a report that can be viewed on the Seven Bridges Platform or downloaded to your local drive. The report is also rendered in a page that can be viewed directly from outside the Platform in any internet browser. Files that can be visualized with CummeRbundQC have the special extension cuffdiffcummerbund_report.b64html. Click any file with the extension **cuffdiffcummerbund_report.b64html** to access the CummeRbundQC report. [block:image] { "images": [ { "image": [ "https://files.readme.io/xIeklOuRQ82hUVoO7IHA_cummeRbund%20report.png", "cummeRbund report.png", "1403", "621", "#ce943f", "" ], "border": true } ] } [/block] The left sidebar shows the contents of the CummeRbundQC report. To fully understand the report and plots, we recommend that you read the <a href="http://www.bioconductor.org/packages/release/bioc/html/cummeRbund.html" target="blank">tutorial for this package</a>.