{"_id":"5b0e13ffc4664e0003c75b95","project":"5b0e13ffc4664e0003c75a66","category":{"_id":"5b0e13ffc4664e0003c75aa4","project":"5b0e13ffc4664e0003c75a66","version":"5b0e13ffc4664e0003c75a67","__v":0,"sync":{"url":"","isSync":false},"reference":false,"createdAt":"2016-06-23T11:34:02.608Z","from_sync":false,"order":27,"slug":"interactive-analysis","title":"INTERACTIVE ANALYSIS"},"parentDoc":null,"version":{"_id":"5b0e13ffc4664e0003c75a67","project":"5b0e13ffc4664e0003c75a66","__v":4,"createdAt":"2015-09-17T16:58:03.490Z","releaseDate":"2015-09-17T16:58:03.490Z","categories":["5b0e13ffc4664e0003c75a68","5b0e13ffc4664e0003c75a69","5b0e13ffc4664e0003c75a6a","5b0e13ffc4664e0003c75a6b","5b0e13ffc4664e0003c75a6c","5b0e13ffc4664e0003c75a6d","5b0e13ffc4664e0003c75a6e","5b0e13ffc4664e0003c75a6f","5b0e13ffc4664e0003c75a70","5b0e13ffc4664e0003c75a71","5b0e13ffc4664e0003c75a72","5b0e13ffc4664e0003c75a73","5b0e13ffc4664e0003c75a74","5b0e13ffc4664e0003c75a75","5b0e13ffc4664e0003c75a76","5b0e13ffc4664e0003c75a77","5b0e13ffc4664e0003c75a89","5b0e13ffc4664e0003c75a8a","5b0e13ffc4664e0003c75a9d","5b0e13ffc4664e0003c75a9e","5b0e13ffc4664e0003c75a9f","5b0e13ffc4664e0003c75aa0","5b0e13ffc4664e0003c75aa1","5b0e13ffc4664e0003c75aa2","5b0e13ffc4664e0003c75aa3","5b0e13ffc4664e0003c75aa4","5b0e13ffc4664e0003c75aa5","5b0e13ffc4664e0003c75aa6","5b0e13ffc4664e0003c75aa7","5b0e13ffc4664e0003c75aa8","5b0e13ffc4664e0003c75aa9","5b0e13ffc4664e0003c75aaa","5b0e13ffc4664e0003c75aab","5b0e13ffc4664e0003c75aac","5b0e13ffc4664e0003c75aad","5b0e13ffc4664e0003c75aae","5b0e13ffc4664e0003c75aaf","5b0e13ffc4664e0003c75ab2","5bb3374f4306ad0003eb18e7","5bbf3c5373e72a000318362b","5bc065567d1cb0000384c649","5cbf19a5f9181f0033fbb968"],"is_deprecated":false,"is_hidden":false,"is_beta":true,"is_stable":true,"codename":"","version_clean":"1.0.0","version":"1.0"},"user":"566590c83889610d0008a253","__v":0,"githubsync":"","metadata":{"title":"","description":"","image":[]},"updates":[],"next":{"pages":[],"description":""},"createdAt":"2016-06-23T10:46:29.087Z","link_external":false,"link_url":"","sync_unique":"","hidden":false,"api":{"settings":"","results":{"codes":[]},"auth":"required","params":[],"url":""},"isReference":false,"order":4,"body":"[FastQC](http://www.bioinformatics.babraham.ac.uk/projects/fastqc/) is one of the most popular quality control tools for high-throughput sequence data.\n\nTo get a FastQC report for your FASTQ files, run the public **FastQC analysis workflow**. The workflow outputs a report file whose name ends **fastqc.b64html** that can be viewed directly in your internet browser.\n[block:image]\n{\n  \"images\": [\n    {\n      \"image\": [\n        \"https://files.readme.io/Y25lcSeHQKzTHcFUOc2V_fastqc-1.jpeg\",\n        \"fastqc-1.jpeg\",\n        \"1244\",\n        \"770\",\n        \"#41a61e\",\n        \"\"\n      ],\n      \"border\": true\n    }\n  ]\n}\n[/block]\nThe left sidebar of the FastQC report shows its contents. For a full explanation of the information shown in the report, we refer you to the package [tutorial](http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/), in particular to section 3 on Analysis Modules.","excerpt":"<a name=\"top\"></a>","slug":"fastqc","type":"basic","title":"FastQC"}

FastQC

<a name="top"></a>

[FastQC](http://www.bioinformatics.babraham.ac.uk/projects/fastqc/) is one of the most popular quality control tools for high-throughput sequence data. To get a FastQC report for your FASTQ files, run the public **FastQC analysis workflow**. The workflow outputs a report file whose name ends **fastqc.b64html** that can be viewed directly in your internet browser. [block:image] { "images": [ { "image": [ "https://files.readme.io/Y25lcSeHQKzTHcFUOc2V_fastqc-1.jpeg", "fastqc-1.jpeg", "1244", "770", "#41a61e", "" ], "border": true } ] } [/block] The left sidebar of the FastQC report shows its contents. For a full explanation of the information shown in the report, we refer you to the package [tutorial](http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/), in particular to section 3 on Analysis Modules.