{"_id":"5b0e13ffc4664e0003c75cdf","__v":0,"parentDoc":null,"project":"5b0e13ffc4664e0003c75a66","user":"566590c83889610d0008a253","version":{"_id":"5b0e13ffc4664e0003c75a67","project":"5b0e13ffc4664e0003c75a66","__v":4,"createdAt":"2015-09-17T16:58:03.490Z","releaseDate":"2015-09-17T16:58:03.490Z","categories":["5b0e13ffc4664e0003c75a68","5b0e13ffc4664e0003c75a69","5b0e13ffc4664e0003c75a6a","5b0e13ffc4664e0003c75a6b","5b0e13ffc4664e0003c75a6c","5b0e13ffc4664e0003c75a6d","5b0e13ffc4664e0003c75a6e","5b0e13ffc4664e0003c75a6f","5b0e13ffc4664e0003c75a70","5b0e13ffc4664e0003c75a71","5b0e13ffc4664e0003c75a72","5b0e13ffc4664e0003c75a73","5b0e13ffc4664e0003c75a74","5b0e13ffc4664e0003c75a75","5b0e13ffc4664e0003c75a76","5b0e13ffc4664e0003c75a77","5b0e13ffc4664e0003c75a89","5b0e13ffc4664e0003c75a8a","5b0e13ffc4664e0003c75a9d","5b0e13ffc4664e0003c75a9e","5b0e13ffc4664e0003c75a9f","5b0e13ffc4664e0003c75aa0","5b0e13ffc4664e0003c75aa1","5b0e13ffc4664e0003c75aa2","5b0e13ffc4664e0003c75aa3","5b0e13ffc4664e0003c75aa4","5b0e13ffc4664e0003c75aa5","5b0e13ffc4664e0003c75aa6","5b0e13ffc4664e0003c75aa7","5b0e13ffc4664e0003c75aa8","5b0e13ffc4664e0003c75aa9","5b0e13ffc4664e0003c75aaa","5b0e13ffc4664e0003c75aab","5b0e13ffc4664e0003c75aac","5b0e13ffc4664e0003c75aad","5b0e13ffc4664e0003c75aae","5b0e13ffc4664e0003c75aaf","5b0e13ffc4664e0003c75ab2","5bb3374f4306ad0003eb18e7","5bbf3c5373e72a000318362b","5bc065567d1cb0000384c649","5cbf19a5f9181f0033fbb968"],"is_deprecated":false,"is_hidden":false,"is_beta":true,"is_stable":true,"codename":"","version_clean":"1.0.0","version":"1.0"},"category":{"_id":"5b0e13ffc4664e0003c75aa4","project":"5b0e13ffc4664e0003c75a66","version":"5b0e13ffc4664e0003c75a67","__v":0,"sync":{"url":"","isSync":false},"reference":false,"createdAt":"2016-06-23T11:34:02.608Z","from_sync":false,"order":27,"slug":"interactive-analysis","title":"INTERACTIVE ANALYSIS"},"githubsync":"","metadata":{"title":"","description":"","image":[]},"updates":[],"next":{"pages":[],"description":""},"createdAt":"2016-06-23T11:42:56.347Z","link_external":false,"link_url":"","sync_unique":"","hidden":false,"api":{"settings":"","results":{"codes":[]},"auth":"required","params":[],"url":""},"isReference":false,"order":6,"body":"The Seven Bridges Coverage app has been developed to calculate the depth of exon coverage, given in a BED file with reads defined in a BAM file.  The app is built on the 'coverageBed' function. It provides a report in the form of an interactive built-in visualization page.  The Seven Bridges Coverage app summary report is available for all files with the **extension.summary**.\n\nClick any file with the extension.summary to access its Seven Bridges Coverage summary report.\n[block:image]\n{\n  \"images\": [\n    {\n      \"image\": [\n        \"https://files.readme.io/DbwGb4oQS32TnvaZutGd_coverage-app.png\",\n        \"coverage-app.png\",\n        \"1200\",\n        \"683\",\n        \"#596d78\",\n        \"\"\n      ],\n      \"border\": true\n    }\n  ]\n}\n[/block]\n  * The depth of coverage is shown on the x-axis, and target region bases on the y-axis\n  * The overall distribution of the target coverage is shown below the plot. To change the coverage threshold, use the top slider.\n  * To scale the y-axis, use the slider on the right side of the plot.\n  * The Birds-eye view is above the plot with the region currently viewed highlighted in red. To change the birds-eye view, drag the red view region along the x-axis.","excerpt":"<a name=\"top\"></a>","slug":"the-seven-bridges-coverage-app","type":"basic","title":"The Seven Bridges Coverage app"}

The Seven Bridges Coverage app

<a name="top"></a>

The Seven Bridges Coverage app has been developed to calculate the depth of exon coverage, given in a BED file with reads defined in a BAM file. The app is built on the 'coverageBed' function. It provides a report in the form of an interactive built-in visualization page. The Seven Bridges Coverage app summary report is available for all files with the **extension.summary**. Click any file with the extension.summary to access its Seven Bridges Coverage summary report. [block:image] { "images": [ { "image": [ "https://files.readme.io/DbwGb4oQS32TnvaZutGd_coverage-app.png", "coverage-app.png", "1200", "683", "#596d78", "" ], "border": true } ] } [/block] * The depth of coverage is shown on the x-axis, and target region bases on the y-axis * The overall distribution of the target coverage is shown below the plot. To change the coverage threshold, use the top slider. * To scale the y-axis, use the slider on the right side of the plot. * The Birds-eye view is above the plot with the region currently viewed highlighted in red. To change the birds-eye view, drag the red view region along the x-axis.